1 )Wang YL, Wang YQ, Song ZQ, Zhang HY. Repression of MYBL2 by both microRNA858a and HY5 Leads to the Activation of Anthocyanin Biosynthetic Pathway in Arabidopsis. Molecular Plant, 2016, DOI: http://dx.doi.org/10.1016/j.molp.2016.07.003. (通讯作者)

2) Sun SX, Xiao JF, Zhang HY*, hang Z*. Pangenome evidence for higher codon usage bias and stronger translational selection in core genes of Escherichia coli. Frontiers in Microbiology, 2016, 7:1180, DOI: 10.3389/fmicb.2016.01180 (共同通讯作者)

3) Hao LL, et al., Zhang HY*, He H*, Hu SN*, Zhang Z*. Information Commons for Rice (IC4R). Nucleic Acid Research. 2016.44:D1172-1180. (共同通讯作者)

4) Gong FP, Wu XL, Zhang HY, Chen YH, Wang W. Making better maize plants for sustainable grain production in a changing climate. Frontiers in Plant Science. 2015, 6: 835-840.

5) Huang LF, Zhang HC, Zhang HY, Deng XW, Wei N. HY5 regulates nitrite reductase 1 (NIR1) and ammonium transporter1;2 (AMT1;2) in Arabidopsis seedlings. Plant Science. 2015, 238: 330-339.

6) Zhang HY, Zhao X, Li JG, Cai HC, Deng XW, Li L. MicroRNA408 Is Critical for the HY5-SPL7 Gene Network That Mediates Coordinated Response to Light and Copper. Plant Cell, 2014, 26:4933-4953.

7）Zhang HY, Li L. SQUAMOSA Promoter Binding Protein-Like7 regulated microRNA408 is required for vegetative development in Arabidopsis. Plant J. 2013, 74:98-109.

8）Zhang HY, Deng XW, Li L. Analysis of allele-specific gene expression using a target-oriented tiling microarray assay. Meth. Mol. Biol. 2013, 1067:65-76.3）

9）Zhao X*, Zhang HY*, Li L. Identification and analysis of the proximal promoters of microRNA genes in Arabidopsis. Genomics, 2013, 101:187-194. 

10）Yang XZ*, Zhang HY*, Li L. Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis. Plant J. 2012, 70: 421-431.

11）Feng XY, Peng ZY, Fu X, Zhang HY, Li SG, Deng XW, Fan LM. Similarity and distinction between organ-specific gibberellin-modulated genome expression between Arabidopsis and rice. Environ. Exp. Bot. 2012, 78:127-137.

12）Yang XZ, Zhang HY, Li L. Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data. Genomics, 2011, 98:40-46.

13）Zhang HY, He H, Wang XC, Wang XF, Yang XZ, Li L, Deng XW. Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations. Plant J. 2011, 65:346-358.

14）Li J, Li G, Gao S, Martinez C, He G, Zhou Z, Huang X, Lee JH, Zhang H, Shen Y, Wang H, Deng XW. Arabidopsis transcription factor Elongated Hypocotyl5 plays a role in the feedback regulation of phytochrome A signaling. Plant Cell, 2010, 22: 3634-3649.

15）He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R, Deng XW. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell, 2010, 22:17-33.

16）He H*, Zhang HY*, Wang XF, Wu N, Yang XZ, Chen RS, Li Y, Deng XW, Li L. Development of a versatile, target-oriented tiling microarray assay for measuring allele-specific gene expression. Genomics, 2010, 96: 308-315.

17)Jiao YL, Tausta SL, Gandotra N, Sun N, Liu T, Clay NK, Ceserani T, Chen MQ, Ma LG, Holford M, Zhang HY, Zhao HY, Deng XW, Nelson T. A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nature Genetics, 2009, 42: 258-263.

18）Peng ZY*, Zhang HY*, Liu TT, Dzikiewicz KM, Li SG, Wang XF, Hu GC, Zhu ZG, Wei XH, Zhu QH, Sun ZX, Ge S, Ma LG, Li L, Deng XW. Characterization of the genome expression trends in the heading-stage panicle of six rice lineages. Genomics, 2009, 93: 169-178.

19）Zhang HY*, He H*, Chen LB, Li L, Liang MZ, Wang XF, Liu XG, He GM, Chen RS, Ma LG, Deng XW. A Genome-Wide Transcription Analysis Reveals a Close Correlation of Promoter INDEL Polymorphism and Heterotic Gene Expression in Rice Hybrids. Molecular Plant, 2008, 1: 720-731.

20）Liu YF, Wang F, Zhang HY, He H, Ma LG, Deng XW. Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. Plant J. 2008, 55: 844-856.

21）Chen H, Zhang JY, Neff MM, Hong SW, Zhang HY, Deng XW, Xiong LM. Integration of light and abscisic acid signaling during seed germination and early seedling development. Proc. Natl. Acad. Sci. 2008, 105: 4495-4500.

22）Menon S, Chi H, Zhang H, Deng XW, Flavell RA, Wei N. COP9 Nature Immunology, 2007, 8: 1236-1245

23）Liu B, Chen Z, Song X, Liu C, Cui X, Zhao X, Fang J, Xu W, Zhang H, Wang X, Chu C, Deng X, Xue Y, Cao X. Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development. Plant Cell, 2007, 19: 2705-2718.

24)Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW. Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development. Plant Cell, 2006, 18: 1991-2004.

25）Zhang HY, Xie XZ, Xu YZ, Wu NH. Isolation and functional assessment of a tomato proteinase inhibitor II gene. Plant Physiol. and Bioch. 2004, 42: 437-444.