1.Ruoyu Luo, HaiBin Wei, Ye Lin, KangKang Wang, Yixue Li and Yang Zhong. Photosynthetic metabolism of C3 plants shows highly cooperative regulation to maintain function under changing environmental conditions: a systems biological analysis of robustness. Proc Natl Acad Sci USA; Vol 106, No 3, 847-852, 2009。
2.Ruo-yu Luo, Yi-Xue Li, Qingming Luo. In reply: ‘Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions’ . Molecular Systems Biology 4, Article number 208; doi:10.1038/msb.2008.38
3.Ruo-yu Luo, Sha Liao, GuanYang Tao, YuanYuan Li, ShaoQun Zeng, YiXue Li, and Qingming
Luo. Dynamic analysis of optimality in myocardial metabolic networks under normal and ischemic conditions. Molecular Systems Biology msb4100071, E1-E6, 2006 
4.Ruoyu Luo*, Lin Ye，Chenyang Tao, Kankan Wang . Simulation of E.coli gene regulation
including overlapping cell cycles, growth, division, time delays and noise. Plos one ,Vol 8,issue 4,2013。 
5.Ruoyu Luo, Sha Liao, Shaoqun Zeng, Yixue Li, Qingming Luo. FluxExplorer: a general
platform for modeling and analyses of metabolic networks based on stoichiometry. Chinese Science Bulletin Vol. 51, pp: 689-696, 2006